Variant report

Variant	rs16847412
Chromosome Location	chr2:142618914-142618915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10164495	0.81[JPT][hapmap]
rs10182153	0.93[YRI][hapmap]
rs10205635	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs10496901	0.81[CHB][hapmap]
rs10496902	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs13385804	0.93[YRI][hapmap]
rs13430058	1.00[YRI][hapmap]
rs13431583	0.83[YRI][hapmap]
rs16847151	0.81[JPT][hapmap]
rs16847265	0.85[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]
rs16847310	0.87[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16847314	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16847347	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs16847368	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16847370	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs16847376	1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61632456	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7586153	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv459674	chr2:142592560-142636907	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv583237	chr2:142592560-142636907	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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