The 2.0 version of rSNPBase

Variant report

Variant rs12105322
Chromosome Location chr2:55545757-55545758
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:55510000-55553600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
2 chr2:55510000-55578800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr2:55510200-55559000 Weak transcription Psoas Muscle Psoas
4 chr2:55510200-55616800 Weak transcription Fetal Intestine Small intestine
5 chr2:55511200-55547000 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr2:55512000-55549800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
7 chr2:55512400-55577400 Weak transcription Right Ventricle heart
8 chr2:55512600-55546000 Weak transcription Small Intestine intestine
9 chr2:55514800-55549600 Strong transcription iPS-20b Cell Line embryonic stem cell
10 chr2:55515800-55550400 Strong transcription HUES64 Cell Line embryonic stem cell
11 chr2:55518600-55591400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr2:55519800-55579000 Weak transcription Primary B cells from cord blood blood
13 chr2:55520200-55554400 Weak transcription Duodenum Mucosa Duodenum
14 chr2:55520400-55591200 Strong transcription Monocytes-CD14+_RO01746 blood
15 chr2:55521400-55591000 Strong transcription Primary monocytes fromperipheralblood blood
16 chr2:55523000-55548000 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr2:55523000-55584400 Weak transcription Aorta Aorta
18 chr2:55523200-55584800 Weak transcription Primary T cells fromperipheralblood blood
19 chr2:55523600-55548000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
20 chr2:55523600-55600600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
21 chr2:55524800-55549400 Strong transcription Primary hematopoietic stem cells short term culture blood
22 chr2:55526400-55549600 Strong transcription HUES48 Cell Line embryonic stem cell
23 chr2:55527000-55546400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr2:55534200-55589400 Weak transcription Pancreas Pancrea
25 chr2:55535200-55549600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr2:55535200-55549600 Strong transcription Dnd41 blood
27 chr2:55535400-55546400 Strong transcription HepG2 liver
28 chr2:55535400-55548000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr2:55535400-55550200 Strong transcription HUES6 Cell Line embryonic stem cell
30 chr2:55536400-55548400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
31 chr2:55537200-55546200 Strong transcription Fetal Lung lung
32 chr2:55537200-55546600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr2:55537200-55550200 Strong transcription HSMM muscle
34 chr2:55537400-55549600 Strong transcription Fetal Thymus thymus
35 chr2:55537600-55546600 Strong transcription Fetal Muscle Leg muscle
36 chr2:55537600-55548600 Strong transcription Fetal Muscle Trunk muscle
37 chr2:55537600-55550200 Strong transcription Brain Substantia Nigra brain
38 chr2:55537800-55546200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr2:55537800-55546200 Strong transcription Primary hematopoietic stem cells blood
40 chr2:55537800-55554600 Weak transcription ES-I3 Cell Line embryonic stem cell
41 chr2:55537800-55609400 Weak transcription Lung lung
42 chr2:55538000-55546200 Strong transcription Brain Germinal Matrix brain
43 chr2:55538000-55549600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr2:55538000-55550000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
45 chr2:55538400-55546800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr2:55538600-55548600 Strong transcription Brain Hippocampus Middle brain
47 chr2:55538600-55548800 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
48 chr2:55538600-55557000 Strong transcription Cortex derived primary cultured neurospheres brain
49 chr2:55538800-55546200 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
50 chr2:55539200-55546000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015