Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:141564064..141566563-chr3:141571317..141573505,3	K562	blood:
2	chr3:141562893..141564939-chr3:141566570..141569056,2	K562	blood:
3	chr3:141550997..141553975-chr3:141562841..141565146,2	K562	blood:
4	chr3:141548195..141550715-chr3:141563735..141566666,2	K562	blood:

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11719756	0.85[ASN][1000 genomes]
rs13066028	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16851872	0.89[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs35557198	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7622816	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7635198	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141550800-141571800	Weak transcription	Esophagus	oesophagus
2	chr3:141560200-141568200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:141560600-141572600	Weak transcription	Spleen	Spleen
4	chr3:141562600-141565000	Enhancers	K562	blood
5	chr3:141564000-141565000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr3:141564200-141564800	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr3:141564200-141565000	Enhancers	Fetal Intestine Small	intestine
8	chr3:141564200-141565200	Enhancers	HUVEC	blood vessel
9	chr3:141564400-141564800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr3:141564400-141564800	Enhancers	Colonic Mucosa	Colon
11	chr3:141564400-141564800	Enhancers	Placenta	Placenta
12	chr3:141564400-141565000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:141564400-141565000	Enhancers	HepG2	liver
14	chr3:141564400-141565200	Enhancers	Fetal Intestine Large	intestine
15	chr3:141564400-141565200	Enhancers	Fetal Stomach	stomach
16	chr3:141564600-141565000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr3:141564600-141565000	Enhancers	Adipose Nuclei	Adipose
18	chr3:141564600-141565000	Bivalent Enhancer	Stomach Mucosa	stomach
19	chr3:141564600-141565200	Enhancers	Duodenum Mucosa	Duodenum
20	chr3:141564600-141565200	Enhancers	Hela-S3	cervix
21	chr3:141564600-141565400	Enhancers	Fetal Lung	lung
22	chr3:141564600-141565400	Enhancers	Rectal Mucosa Donor 29	rectum

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