Variant report

Variant	rs16851872
Chromosome Location	chr3:141572043-141572044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141564064..141566563-chr3:141571317..141573505,3	K562	blood:
2	chr3:141571955..141574364-chr3:141594385..141596373,2	MCF-7	breast:
3	chr3:141567996..141570024-chr3:141570674..141572307,2	K562	blood:

Variant related genes	Relation type
ENSG00000069849	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11719756	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107859	0.85[ASN][1000 genomes]
rs13066028	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35557198	0.87[ASN][1000 genomes]
rs7622816	0.87[ASN][1000 genomes]
rs9849533	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv591894	chr3:141570294-141572848	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv6972	chr3:141571890-141573010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3462576	chr3:141571978-141572976	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv513080	chr3:141571987-141573763	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3462579	chr3:141572006-141572985	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv591895	chr3:141572043-141572796	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv591896	chr3:141572043-141572848	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv511222	chr3:141572043-141573761	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv591897	chr3:141572043-141573761	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141560600-141572600	Weak transcription	Spleen	Spleen
2	chr3:141565000-141578000	Weak transcription	Fetal Intestine Small	intestine
3	chr3:141567600-141574600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:141568600-141572400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr3:141568600-141572400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:141568600-141579600	Weak transcription	Fetal Thymus	thymus
7	chr3:141569800-141572600	Enhancers	HUVEC	blood vessel
8	chr3:141570800-141572400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr3:141570800-141578600	Weak transcription	Left Ventricle	heart
10	chr3:141571800-141572800	Enhancers	Esophagus	oesophagus
11	chr3:141571800-141573000	Enhancers	Primary hematopoietic stem cells	blood
12	chr3:141571800-141573000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr3:141571800-141573600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:141572000-141572400	Weak transcription	Lung	lung
15	chr3:141572000-141572600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr3:141572000-141572600	Enhancers	K562	blood
17	chr3:141572000-141572800	Enhancers	Colon Smooth Muscle	Colon
18	chr3:141572000-141572800	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr3:141572000-141572800	Enhancers	Hela-S3	cervix
20	chr3:141572000-141573000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:141572000-141573000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:141572000-141573000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:141572000-141573000	Enhancers	Adipose Nuclei	Adipose
24	chr3:141572000-141573000	Enhancers	Rectal Mucosa Donor 31	rectum

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