Variant report

Variant	rs12108396
Chromosome Location	chr4:160310910-160310911
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12645666	0.81[ASN][1000 genomes]
rs1609412	0.81[ASN][1000 genomes]
rs17038157	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2244934	0.81[ASN][1000 genomes]
rs2463987	0.81[ASN][1000 genomes]
rs2699017	0.81[ASN][1000 genomes]
rs6844998	0.81[ASN][1000 genomes]
rs72967790	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022771	chr4:160188801-160324683	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160303800-160321600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:160310600-160311800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:160310800-160311000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:160310800-160311400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:160310800-160312200	Weak transcription	NH-A	brain
6	chr4:160310800-160312600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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