Variant report

Variant	rs1609412
Chromosome Location	chr4:160336180-160336181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160335978..160338055-chr4:160355231..160356963,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10011024	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10020585	0.85[ASN][1000 genomes]
rs10030535	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11100222	0.85[EUR][1000 genomes]
rs11100224	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11100225	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11100226	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11100227	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11100228	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11733568	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12108396	0.81[ASN][1000 genomes]
rs12645666	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17038157	1.00[ASN][1000 genomes]
rs2244934	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348164	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2463987	1.00[ASN][1000 genomes]
rs2699017	1.00[ASN][1000 genomes]
rs4691558	0.87[EUR][1000 genomes]
rs4691563	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4691564	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6536418	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6812503	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6812880	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6822019	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6835707	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6835727	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6836178	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6836370	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6836429	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6844998	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7439919	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7439988	0.80[ASN][1000 genomes]
rs9790387	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9790650	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9990950	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160332200-160337400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:160332200-160337400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:160332400-160337400	Weak transcription	NHEK	skin
4	chr4:160332400-160338400	Weak transcription	HMEC	breast
5	chr4:160334800-160337400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:160335000-160337000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr4:160335800-160336400	Enhancers	Left Ventricle	heart
8	chr4:160335800-160338400	Weak transcription	NH-A	brain

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