Variant report

Variant	rs11100222
Chromosome Location	chr4:160324498-160324499
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10030535	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11100224	0.80[ASN][1000 genomes]
rs12645666	0.87[EUR][1000 genomes]
rs1609412	0.85[EUR][1000 genomes]
rs17306268	0.96[ASN][1000 genomes]
rs2244934	0.87[EUR][1000 genomes]
rs2348164	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2463988	0.94[ASN][1000 genomes]
rs2699004	0.90[ASN][1000 genomes]
rs2699015	1.00[ASN][1000 genomes]
rs2699018	0.96[ASN][1000 genomes]
rs2699023	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2699024	0.94[ASN][1000 genomes]
rs2699026	0.90[ASN][1000 genomes]
rs2699030	0.90[ASN][1000 genomes]
rs2699032	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2699033	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2699038	0.90[ASN][1000 genomes]
rs2707659	0.90[ASN][1000 genomes]
rs2707660	0.90[ASN][1000 genomes]
rs2707661	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2707665	0.96[ASN][1000 genomes]
rs4690940	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4690941	0.86[ASN][1000 genomes]
rs4691558	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6536418	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6812503	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6812880	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6822019	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6835707	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6835727	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6836178	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6836370	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6836429	0.84[EUR][1000 genomes]
rs6844998	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72967790	0.87[ASN][1000 genomes]
rs7439919	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9790451	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022771	chr4:160188801-160324683	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160321400-160324600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160322000-160324800	Enhancers	HMEC	breast
3	chr4:160323200-160331000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:160323400-160335800	Weak transcription	Left Ventricle	heart
5	chr4:160324400-160324600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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