Variant report

Variant	rs9790650
Chromosome Location	chr4:160348486-160348487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10011024	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10020585	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10030535	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11100224	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11100225	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11100226	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11100227	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11100228	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11733568	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12645666	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1609412	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17038157	0.94[ASN][1000 genomes]
rs2244934	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2348164	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2463987	0.94[ASN][1000 genomes]
rs2699008	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2699017	0.94[ASN][1000 genomes]
rs2699023	0.89[EUR][1000 genomes]
rs2699032	0.88[EUR][1000 genomes]
rs2699033	0.88[EUR][1000 genomes]
rs2707659	0.83[EUR][1000 genomes]
rs2707660	0.83[EUR][1000 genomes]
rs2707661	0.88[EUR][1000 genomes]
rs4690940	0.88[EUR][1000 genomes]
rs4690941	0.82[EUR][1000 genomes]
rs4691563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4691564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6536418	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6812503	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6812880	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6822019	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6835707	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6835727	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6836178	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6836370	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6836429	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6844998	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7439919	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7439988	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9790387	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9990950	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160347400-160348600	Enhancers	H9 Cell Line	embryonic stem cell
2	chr4:160347400-160349400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:160347600-160348600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:160347600-160349200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:160347600-160351000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:160347600-160356800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:160347800-160350200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:160348000-160348800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:160348200-160348600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:160348400-160349000	Enhancers	Left Ventricle	heart
11	chr4:160348400-160349000	Enhancers	HepG2	liver

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