Variant report

Variant	rs2699008
Chromosome Location	chr4:160355956-160355957
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10011024	0.85[EUR][1000 genomes]
rs10030535	0.84[EUR][1000 genomes]
rs11100224	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11100225	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11100226	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11100227	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11733568	0.80[EUR][1000 genomes]
rs12645666	0.81[EUR][1000 genomes]
rs2244934	0.81[EUR][1000 genomes]
rs2348164	0.82[AMR][1000 genomes]
rs2699023	0.82[EUR][1000 genomes]
rs2699032	0.81[EUR][1000 genomes]
rs2699033	0.81[EUR][1000 genomes]
rs2707661	0.81[EUR][1000 genomes]
rs4690940	0.81[EUR][1000 genomes]
rs4691563	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4691564	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6536418	0.81[EUR][1000 genomes]
rs6812503	0.81[EUR][1000 genomes]
rs6812880	0.81[EUR][1000 genomes]
rs6822019	0.82[AMR][1000 genomes]
rs6835707	0.81[EUR][1000 genomes]
rs6835727	0.81[EUR][1000 genomes]
rs6836178	0.84[EUR][1000 genomes]
rs6836370	0.84[EUR][1000 genomes]
rs6836429	0.84[EUR][1000 genomes]
rs6844998	0.82[EUR][1000 genomes]
rs7439919	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9790387	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9790650	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9990950	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160347600-160356800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:160349000-160356600	Weak transcription	HepG2	liver
3	chr4:160350600-160367800	Weak transcription	HSMM	muscle
4	chr4:160351000-160356000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:160354600-160356600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:160355000-160356400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:160355000-160356600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:160355000-160356600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:160355200-160356000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:160355400-160357200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:160355400-160357200	Enhancers	HMEC	breast
12	chr4:160355400-160357400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr4:160355600-160356000	Enhancers	NHDF-Ad	bronchial
14	chr4:160355600-160357400	Flanking Active TSS	NHEK	skin
15	chr4:160355600-160357600	Enhancers	HUVEC	blood vessel
16	chr4:160355800-160356200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr4:160355800-160356200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr4:160355800-160356800	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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