Variant report

Variant	rs9990950
Chromosome Location	chr4:160350289-160350290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10011024	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10020585	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10023936	0.98[AFR][1000 genomes]
rs10030535	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11100224	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11100225	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11100226	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11100227	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11100228	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11733568	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12645666	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1609412	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17038157	0.94[ASN][1000 genomes]
rs2244934	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2348164	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2463987	0.94[ASN][1000 genomes]
rs2699008	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2699017	0.94[ASN][1000 genomes]
rs2699023	0.86[EUR][1000 genomes]
rs2699032	0.88[EUR][1000 genomes]
rs2699033	0.88[EUR][1000 genomes]
rs2707659	0.83[EUR][1000 genomes]
rs2707660	0.83[EUR][1000 genomes]
rs2707661	0.88[EUR][1000 genomes]
rs4690940	0.88[EUR][1000 genomes]
rs4690941	0.82[EUR][1000 genomes]
rs4691563	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4691564	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6536418	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6812503	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6812880	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6822019	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6834717	0.83[AMR][1000 genomes]
rs6835707	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6835727	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6836178	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6836370	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6836429	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6844998	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7439919	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7439988	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9790387	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9790650	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160347600-160351000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr4:160347600-160356800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:160348800-160351200	Enhancers	Fetal Heart	heart
4	chr4:160349000-160350800	Enhancers	Fetal Muscle Leg	muscle
5	chr4:160349000-160356600	Weak transcription	HepG2	liver
6	chr4:160349200-160350400	Weak transcription	Right Atrium	heart
7	chr4:160349200-160355800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:160349400-160350600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:160349600-160350800	Enhancers	HSMMtube	muscle
10	chr4:160349800-160350400	Enhancers	Right Ventricle	heart
11	chr4:160350000-160350600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
12	chr4:160350000-160350800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr4:160350200-160350400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr4:160350200-160350600	Enhancers	Placenta	Placenta
15	chr4:160350200-160350600	Enhancers	Psoas Muscle	Psoas
16	chr4:160350200-160350600	Enhancers	HSMM	muscle
17	chr4:160350200-160350800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr4:160350200-160350800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:160350200-160350800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:160350200-160350800	Enhancers	Fetal Kidney	kidney
21	chr4:160350200-160350800	Enhancers	Fetal Lung	lung
22	chr4:160350200-160350800	Flanking Active TSS	Left Ventricle	heart
23	chr4:160350200-160351200	Enhancers	HUVEC	blood vessel
24	chr4:160350200-160351200	Enhancers	NHEK	skin

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