Variant report

Variant	rs6834717
Chromosome Location	chr4:160344392-160344393
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10011024	0.83[AMR][1000 genomes]
rs10030535	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11100224	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11100227	0.81[AMR][1000 genomes]
rs11733568	0.82[AMR][1000 genomes]
rs2348164	0.81[AMR][1000 genomes]
rs6812503	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6812880	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6822019	0.81[AMR][1000 genomes]
rs6835707	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6835727	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6836178	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6836370	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6836429	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9790387	0.80[AFR][1000 genomes]
rs9990950	0.83[AMR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160339200-160348000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:160341800-160346800	Weak transcription	K562	blood
3	chr4:160342000-160346400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:160342200-160345600	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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