Variant report

Variant	rs12109308
Chromosome Location	chr5:98393798-98393799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12109206	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12109288	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17166576	0.89[YRI][hapmap]
rs17166582	0.89[YRI][hapmap]
rs6879498	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024391	chr5:98355665-98653657	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98381600-98395800	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr5:98387800-98396600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:98388600-98395800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:98391600-98396000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr5:98391800-98394800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:98391800-98395800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr5:98392200-98395800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr5:98392400-98396600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr5:98393000-98393800	Enhancers	Primary B cells from cord blood	blood
10	chr5:98393200-98393800	Enhancers	HepG2	liver
11	chr5:98393200-98397800	Enhancers	Primary B cells from peripheral blood	blood
12	chr5:98393400-98393800	Enhancers	GM12878-XiMat	blood
13	chr5:98393600-98394000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:98393600-98396000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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