The 2.0 version of rSNPBase

Variant report

Variant rs12109439
Chromosome Location chr5:75766437-75766438
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:75722800-75767800 Weak transcription Ovary ovary
2 chr5:75745000-75767800 Weak transcription Fetal Thymus thymus
3 chr5:75747200-75771600 Weak transcription Fetal Stomach stomach
4 chr5:75747400-75767800 Weak transcription Spleen Spleen
5 chr5:75747800-75767800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr5:75754200-75772000 Weak transcription Fetal Kidney kidney
7 chr5:75754400-75768000 Weak transcription Fetal Lung lung
8 chr5:75755000-75766600 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr5:75757800-75767800 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr5:75758000-75767200 Weak transcription Small Intestine intestine
11 chr5:75758000-75767800 Weak transcription Gastric stomach
12 chr5:75758000-75767800 Weak transcription Lung lung
13 chr5:75758000-75769400 Weak transcription H9 Cell Line embryonic stem cell
14 chr5:75758200-75767800 Weak transcription Pancreas Pancrea
15 chr5:75758200-75775000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
16 chr5:75758400-75769200 Weak transcription Primary B cells from cord blood blood
17 chr5:75759200-75771400 Weak transcription Fetal Intestine Small intestine
18 chr5:75759400-75767800 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr5:75760000-75767200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
20 chr5:75762800-75772600 Enhancers Primary T helper cells PMA-I stimulated --
21 chr5:75764400-75767800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
22 chr5:75764400-75768000 Weak transcription Primary hematopoietic stem cells blood
23 chr5:75764400-75768600 Enhancers Primary T killer memory cells from peripheral blood blood
24 chr5:75764400-75772800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
25 chr5:75765200-75766800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr5:75765200-75767000 Weak transcription Duodenum Mucosa Duodenum
27 chr5:75765200-75767800 Enhancers Liver Liver
28 chr5:75765400-75766600 Enhancers Primary T cells fromperipheralblood blood
29 chr5:75765400-75766600 Enhancers Primary Natural Killer cells fromperipheralblood blood
30 chr5:75765400-75772600 Enhancers Primary T helper naive cells from peripheral blood blood
31 chr5:75765600-75769000 Weak transcription Primary neutrophils fromperipheralblood blood
32 chr5:75765600-75773600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
33 chr5:75765800-75769400 Enhancers Rectal Mucosa Donor 31 rectum
34 chr5:75765800-75772000 Enhancers Primary T helper naive cells fromperipheralblood blood
35 chr5:75765800-75773000 Enhancers Primary T helper cells fromperipheralblood blood
36 chr5:75766000-75767800 Weak transcription Placenta Placenta
37 chr5:75766000-75768000 Enhancers HepG2 liver
38 chr5:75766000-75769200 Weak transcription GM12878-XiMat blood
39 chr5:75766000-75771200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
40 chr5:75766000-75772200 Enhancers Primary T killer naive cells fromperipheralblood blood
41 chr5:75766200-75767200 Weak transcription Monocytes-CD14+_RO01746 blood
42 chr5:75766200-75767800 Enhancers Primary T helper 17 cells PMA-I stimulated --
43 chr5:75766200-75771200 Enhancers Stomach Mucosa stomach
44 chr5:75766200-75772200 Enhancers Primary T regulatory cells fromperipheralblood blood
45 chr5:75766400-75766600 Weak transcription Primary T cells from cord blood blood
46 chr5:75766400-75766800 Weak transcription Primary hematopoietic stem cells short term culture blood
47 chr5:75766400-75767000 Weak transcription Primary monocytes fromperipheralblood blood
48 chr5:75766400-75767800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015