Variant report

Variant	rs12110416
Chromosome Location	chr6:69989961-69989962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs314209	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv886139	chr6:69979989-70041922	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69989000-69991800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:69989200-69990200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:69989200-69990400	Enhancers	Fetal Muscle Leg	muscle
4	chr6:69989200-69991600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:69989200-69991600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:69989200-69992200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:69989600-69990000	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr6:69989600-69990200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:69989600-69990200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:69989600-69990200	Enhancers	Fetal Brain Male	brain
11	chr6:69989600-69991000	Enhancers	Fetal Brain Female	brain
12	chr6:69989600-69991600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:69989800-69990000	Enhancers	Fetal Muscle Trunk	muscle
14	chr6:69989800-69990200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:69989800-69990200	Enhancers	Psoas Muscle	Psoas
16	chr6:69989800-69994000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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