Variant report

Variant	rs314209
Chromosome Location	chr6:69866107-69866108
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69861062..69862637-chr6:69865151..69866778,2	K562	blood:
2	chr6:69859676..69862637-chr6:69865151..69866904,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12110416	1.00[ASN][1000 genomes]
rs1283617	1.00[EUR][1000 genomes]
rs1512233	1.00[EUR][1000 genomes]
rs16900397	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs16900410	1.00[CEU][hapmap]
rs1849304	1.00[CEU][hapmap]
rs1885331	0.81[YRI][hapmap]
rs2785570	1.00[CEU][hapmap]
rs2785572	1.00[CEU][hapmap]
rs2785574	1.00[CEU][hapmap]
rs2793454	1.00[CEU][hapmap]
rs2793455	1.00[EUR][1000 genomes]
rs2793456	1.00[CEU][hapmap]
rs314195	1.00[EUR][1000 genomes]
rs314197	1.00[CEU][hapmap];0.84[YRI][hapmap];1.00[EUR][1000 genomes]
rs314200	1.00[EUR][1000 genomes]
rs314202	1.00[EUR][1000 genomes]
rs314203	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs314205	1.00[EUR][1000 genomes]
rs314206	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs314210	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs314221	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3799051	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3799053	1.00[CEU][hapmap]
rs3799055	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3799064	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3799067	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4295442	1.00[EUR][1000 genomes]
rs4295443	1.00[EUR][1000 genomes]
rs4639298	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs532370	1.00[CEU][hapmap]
rs550287	1.00[CEU][hapmap]
rs618372	1.00[CEU][hapmap]
rs6900966	1.00[CEU][hapmap]
rs6908986	1.00[EUR][1000 genomes]
rs6926984	1.00[EUR][1000 genomes]
rs6939422	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73467725	1.00[EUR][1000 genomes]
rs73469396	1.00[EUR][1000 genomes]
rs7744929	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9294817	1.00[CEU][hapmap]
rs947219	1.00[CEU][hapmap]
rs947222	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv526130	chr6:69851816-69922327	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1029637	chr6:69855697-69916758	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886138	chr6:69865641-69924282	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3410415	chr6:69865771-69866234	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69856400-69874000	Weak transcription	Brain Angular Gyrus	brain
2	chr6:69860800-69876200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69866000-69866600	Enhancers	K562	blood

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