Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1283949	1.00[CEU][hapmap]
rs16900397	1.00[CEU][hapmap]
rs16900410	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2785570	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes]
rs2785572	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes]
rs2785574	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2793454	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes]
rs2793456	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs2793458	0.90[AMR][1000 genomes]
rs314197	1.00[CEU][hapmap]
rs314206	1.00[CEU][hapmap]
rs314209	1.00[CEU][hapmap]
rs314210	1.00[CEU][hapmap]
rs314221	1.00[CEU][hapmap]
rs3799051	1.00[CEU][hapmap]
rs3799053	1.00[CEU][hapmap]
rs3799055	1.00[CEU][hapmap]
rs4639298	1.00[CEU][hapmap]
rs532370	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes]
rs550287	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes]
rs618372	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs6900966	1.00[CEU][hapmap]
rs73745914	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9294817	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs947219	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69701000-69737600	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:69702400-69737600	Weak transcription	Brain Angular Gyrus	brain
4	chr6:69720400-69758600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:69721600-69752200	Weak transcription	Fetal Lung	lung
6	chr6:69723400-69742600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:69729400-69759400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:69729800-69733200	Weak transcription	Osteobl	bone
9	chr6:69732600-69733600	Enhancers	HUVEC	blood vessel
10	chr6:69732600-69733600	Enhancers	NHDF-Ad	bronchial
11	chr6:69732600-69733800	Enhancers	NH-A	brain
12	chr6:69732800-69733400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:69732800-69735800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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