Variant report

Variant	rs4639298
Chromosome Location	chr6:69721802-69721803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1283617	1.00[EUR][1000 genomes]
rs1283949	1.00[CEU][hapmap]
rs1512233	1.00[EUR][1000 genomes]
rs16900397	1.00[CEU][hapmap]
rs16900410	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2785570	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2785572	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2785574	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2793454	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2793455	1.00[EUR][1000 genomes]
rs2793456	1.00[CEU][hapmap]
rs314195	1.00[EUR][1000 genomes]
rs314197	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs314200	1.00[EUR][1000 genomes]
rs314202	1.00[EUR][1000 genomes]
rs314203	1.00[EUR][1000 genomes]
rs314205	1.00[EUR][1000 genomes]
rs314206	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs314209	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs314210	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs314221	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3799051	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3799053	1.00[CEU][hapmap]
rs3799055	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4295442	1.00[EUR][1000 genomes]
rs4295443	1.00[EUR][1000 genomes]
rs532370	1.00[CEU][hapmap]
rs550287	1.00[CEU][hapmap]
rs618372	1.00[CEU][hapmap]
rs6900966	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs6908986	1.00[EUR][1000 genomes]
rs6926984	1.00[EUR][1000 genomes]
rs73467716	1.00[ASN][1000 genomes]
rs73467722	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73467723	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73467725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73745914	1.00[ASN][1000 genomes]
rs9294817	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs947219	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs947222	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69701000-69723000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:69701000-69737600	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:69701200-69724400	Weak transcription	Brain Germinal Matrix	brain
5	chr6:69702400-69728600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:69702400-69737600	Weak transcription	Brain Angular Gyrus	brain
7	chr6:69702600-69723800	Weak transcription	Brain Substantia Nigra	brain
8	chr6:69718600-69722200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:69718600-69726200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:69719200-69722000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:69719200-69722200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr6:69719400-69725800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:69719600-69722000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr6:69719600-69722200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr6:69719600-69722600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:69720400-69758600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:69721400-69728600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:69721400-69728800	Weak transcription	Left Ventricle	heart
19	chr6:69721600-69723000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr6:69721600-69723000	Enhancers	Ovary	ovary
21	chr6:69721600-69723400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:69721600-69723400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:69721600-69752200	Weak transcription	Fetal Lung	lung
24	chr6:69721800-69722400	Enhancers	HUES48 Cell Line	embryonic stem cell

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