Variant report

Variant	rs73467725
Chromosome Location	chr6:69723071-69723072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1283617	1.00[EUR][1000 genomes]
rs1512233	1.00[EUR][1000 genomes]
rs16900410	1.00[ASN][1000 genomes]
rs2785570	1.00[ASN][1000 genomes]
rs2785572	1.00[ASN][1000 genomes]
rs2785574	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2793454	1.00[ASN][1000 genomes]
rs2793455	1.00[EUR][1000 genomes]
rs314195	1.00[EUR][1000 genomes]
rs314197	1.00[EUR][1000 genomes]
rs314200	1.00[EUR][1000 genomes]
rs314202	1.00[EUR][1000 genomes]
rs314203	1.00[EUR][1000 genomes]
rs314205	1.00[EUR][1000 genomes]
rs314206	1.00[EUR][1000 genomes]
rs314209	1.00[EUR][1000 genomes]
rs314210	1.00[EUR][1000 genomes]
rs314221	1.00[EUR][1000 genomes]
rs3799051	1.00[EUR][1000 genomes]
rs3799055	1.00[EUR][1000 genomes]
rs4295442	1.00[EUR][1000 genomes]
rs4295443	1.00[EUR][1000 genomes]
rs4639298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900966	1.00[ASN][1000 genomes]
rs6908986	1.00[EUR][1000 genomes]
rs6926984	1.00[EUR][1000 genomes]
rs73467716	1.00[ASN][1000 genomes]
rs73467722	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73467723	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73745914	1.00[ASN][1000 genomes]
rs9294817	1.00[ASN][1000 genomes]
rs947219	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69701000-69737600	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:69701200-69724400	Weak transcription	Brain Germinal Matrix	brain
4	chr6:69702400-69728600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:69702400-69737600	Weak transcription	Brain Angular Gyrus	brain
6	chr6:69702600-69723800	Weak transcription	Brain Substantia Nigra	brain
7	chr6:69718600-69726200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:69719400-69725800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:69720400-69758600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:69721400-69728600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:69721400-69728800	Weak transcription	Left Ventricle	heart
12	chr6:69721600-69723400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:69721600-69723400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:69721600-69752200	Weak transcription	Fetal Lung	lung
15	chr6:69722200-69723200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr6:69722400-69725800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:69722800-69723200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:69723000-69724000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr6:69723000-69725400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:69723000-69725600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:69723000-69725600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:69723000-69726000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links