Variant report

Variant	rs73467722
Chromosome Location	chr6:69718335-69718336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16900397	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16900410	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2785570	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2785572	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2785574	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2793454	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2793456	1.00[EUR][1000 genomes]
rs2793458	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4639298	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs532370	0.89[AMR][1000 genomes]
rs550287	0.89[AMR][1000 genomes]
rs58203753	1.00[EUR][1000 genomes]
rs60159159	1.00[EUR][1000 genomes]
rs618372	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6900966	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73467716	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73467723	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73467725	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7356942	1.00[EUR][1000 genomes]
rs73745914	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9294817	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947219	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9969097	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69688200-69721200	Weak transcription	Left Ventricle	heart
3	chr6:69701000-69723000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:69701000-69737600	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:69701200-69721200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:69701200-69724400	Weak transcription	Brain Germinal Matrix	brain
7	chr6:69702400-69728600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:69702400-69737600	Weak transcription	Brain Angular Gyrus	brain
9	chr6:69702600-69723800	Weak transcription	Brain Substantia Nigra	brain
10	chr6:69703800-69719400	Weak transcription	Fetal Brain Female	brain
11	chr6:69704800-69721600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:69706400-69720800	Weak transcription	Fetal Lung	lung
13	chr6:69706600-69721600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:69713000-69721400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:69717000-69718600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr6:69717000-69719000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr6:69717000-69719000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr6:69717000-69719200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr6:69717600-69718600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:69717600-69718600	Enhancers	H9 Cell Line	embryonic stem cell
21	chr6:69717600-69720400	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:69717800-69718400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr6:69717800-69718600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:69718200-69719200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:69718200-69719200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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