Variant report

Variant	rs16900397
Chromosome Location	chr6:69701867-69701868
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1283949	1.00[CEU][hapmap]
rs16900410	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2785570	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2785572	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2785574	1.00[CEU][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2793454	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs2793456	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2793458	1.00[EUR][1000 genomes]
rs28729151	1.00[ASN][1000 genomes]
rs314197	1.00[CEU][hapmap]
rs314206	1.00[CEU][hapmap]
rs314209	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs314210	1.00[CEU][hapmap]
rs314221	1.00[CEU][hapmap]
rs4639298	1.00[CEU][hapmap]
rs4706849	0.83[YRI][hapmap]
rs532370	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap]
rs550287	1.00[CEU][hapmap]
rs556962	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs58203753	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60159159	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs618372	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6455306	1.00[CHD][hapmap]
rs6900966	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73467716	1.00[EUR][1000 genomes]
rs73467722	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73467723	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7356942	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73745914	1.00[EUR][1000 genomes]
rs9294817	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs947219	1.00[CEU][hapmap];0.89[LWK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs947222	1.00[CEU][hapmap]
rs9969097	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69686200-69703400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69686800-69706200	Weak transcription	Fetal Lung	lung
4	chr6:69688200-69721200	Weak transcription	Left Ventricle	heart
5	chr6:69692000-69716600	Weak transcription	Fetal Stomach	stomach
6	chr6:69695200-69704400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:69696200-69703400	Weak transcription	Fetal Brain Female	brain
8	chr6:69696400-69715400	Weak transcription	Aorta	Aorta
9	chr6:69700000-69702400	Enhancers	Brain Angular Gyrus	brain
10	chr6:69700800-69710200	Weak transcription	Brain Anterior Caudate	brain
11	chr6:69701000-69702000	Weak transcription	Brain Substantia Nigra	brain
12	chr6:69701000-69703800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:69701000-69706200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:69701000-69723000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:69701000-69737600	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:69701200-69702000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:69701200-69721200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:69701200-69724400	Weak transcription	Brain Germinal Matrix	brain

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