Variant report

Variant	rs28729151
Chromosome Location	chr6:69681929-69681930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16900397	1.00[ASN][1000 genomes]
rs16900410	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs58203753	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60159159	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6900966	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73467716	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7356942	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9294817	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9969097	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
2	chr6:69652200-69684600	Weak transcription	Brain Angular Gyrus	brain
3	chr6:69670200-69685000	Weak transcription	Brain Germinal Matrix	brain
4	chr6:69678200-69684600	Weak transcription	Brain Anterior Caudate	brain
5	chr6:69678200-69684600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:69678400-69684600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:69681000-69684200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:69681600-69682800	Strong transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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