Variant report

Variant	rs618372
Chromosome Location	chr6:69759148-69759149
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1283949	1.00[CEU][hapmap]
rs16900397	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16900410	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1849304	1.00[CEU][hapmap]
rs2785570	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2785572	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2785574	1.00[CEU][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2793454	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2793456	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2793458	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs314197	1.00[CEU][hapmap]
rs314206	1.00[CEU][hapmap]
rs314209	1.00[CEU][hapmap]
rs314210	1.00[CEU][hapmap]
rs314221	1.00[CEU][hapmap]
rs3799051	1.00[CEU][hapmap]
rs3799053	1.00[CEU][hapmap]
rs3799055	1.00[CEU][hapmap]
rs3799064	1.00[CEU][hapmap]
rs3799067	1.00[CEU][hapmap]
rs4639298	1.00[CEU][hapmap]
rs4706849	0.93[YRI][hapmap];0.80[AFR][1000 genomes]
rs532370	1.00[CEU][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs550287	1.00[CEU][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58203753	1.00[EUR][1000 genomes]
rs60159159	1.00[EUR][1000 genomes]
rs6900966	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6939422	1.00[CEU][hapmap]
rs73467716	1.00[EUR][1000 genomes]
rs73467722	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73467723	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7356942	1.00[EUR][1000 genomes]
rs73745914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9294817	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs947219	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs947222	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs9969097	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv463148	chr6:69746054-69781786	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv603632	chr6:69746054-69781786	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv603633	chr6:69748600-69794079	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69729400-69759400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:69753600-69794800	Weak transcription	Fetal Lung	lung
3	chr6:69756400-69769000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:69756600-69759600	Weak transcription	Brain Angular Gyrus	brain
5	chr6:69758600-69760400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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