Variant report

Variant	rs12110746
Chromosome Location	chr6:64397433-64397434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:64396895..64400297-chr6:64403674..64407120,4	K562	blood:
2	chr6:64347461..64349165-chr6:64396342..64398673,2	K562	blood:
3	chr6:64282160..64284462-chr6:64395012..64398209,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266680	Chromatin interaction
ENSG00000112245	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12110813	1.00[AMR][1000 genomes]
rs34644326	1.00[AMR][1000 genomes]
rs9885808	0.95[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022376	chr6:64386826-64445195	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64347000-64422400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:64351200-64405000	Weak transcription	Thymus	Thymus
3	chr6:64354000-64421200	Weak transcription	Gastric	stomach
4	chr6:64365800-64409400	Weak transcription	Fetal Stomach	stomach
5	chr6:64370800-64413400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:64371000-64409000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:64374200-64405800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:64374200-64414600	Weak transcription	HMEC	breast
9	chr6:64375600-64409000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:64381400-64405200	Weak transcription	Brain Germinal Matrix	brain
11	chr6:64384600-64414400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:64387200-64410200	Weak transcription	Colonic Mucosa	Colon
13	chr6:64387200-64421000	Weak transcription	Aorta	Aorta
14	chr6:64387400-64419400	Weak transcription	Fetal Heart	heart
15	chr6:64387600-64421000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:64387600-64423400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:64388000-64412800	Weak transcription	Lung	lung
18	chr6:64388200-64410200	Weak transcription	Fetal Brain Female	brain
19	chr6:64388800-64397800	Strong transcription	Fetal Thymus	thymus
20	chr6:64390000-64397800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:64390000-64417600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr6:64391000-64401000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:64391800-64397800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:64391800-64410800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr6:64392000-64397800	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:64392200-64406000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:64392200-64422400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:64392600-64409200	Weak transcription	Osteobl	bone
29	chr6:64392800-64425200	Weak transcription	NHEK	skin
30	chr6:64393200-64417600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:64393400-64397600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:64393400-64398000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:64393400-64423400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr6:64394000-64397600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:64394600-64414000	Weak transcription	NHLF	lung
36	chr6:64394800-64400200	Weak transcription	Brain Angular Gyrus	brain
37	chr6:64394800-64408400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr6:64394800-64408800	Weak transcription	HUVEC	blood vessel
39	chr6:64394800-64409000	Weak transcription	NHDF-Ad	bronchial
40	chr6:64394800-64413200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:64394800-64413200	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr6:64394800-64414000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr6:64395000-64404800	Weak transcription	Colon Smooth Muscle	Colon
44	chr6:64395000-64408400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr6:64395000-64409000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr6:64395000-64409600	Weak transcription	Psoas Muscle	Psoas
47	chr6:64395000-64413200	Weak transcription	NH-A	brain
48	chr6:64395000-64414000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:64395000-64414000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr6:64395000-64414800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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