Variant report

Variant	rs34644326
Chromosome Location	chr6:64422859-64422860
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12110746	1.00[AMR][1000 genomes]
rs12110813	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022376	chr6:64386826-64445195	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64387600-64423400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:64392800-64425200	Weak transcription	NHEK	skin
3	chr6:64393400-64423400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:64401000-64426400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:64404000-64424600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr6:64404200-64423600	Strong transcription	Dnd41	blood
7	chr6:64404200-64423800	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr6:64404200-64424200	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:64404200-64424600	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:64404200-64424600	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:64404200-64426600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:64404400-64424200	Strong transcription	Fetal Thymus	thymus
13	chr6:64404400-64424800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr6:64404400-64425000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:64404400-64426800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:64404800-64424200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:64404800-64424200	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr6:64404800-64425000	Strong transcription	Primary B cells from peripheral blood	blood
19	chr6:64405000-64424200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:64405400-64426400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:64406000-64426400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:64406200-64424200	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr6:64406400-64423600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr6:64406600-64423600	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr6:64408000-64423800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:64408200-64423600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:64408200-64425200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:64408200-64425200	Strong transcription	Placenta	Placenta
29	chr6:64408400-64424600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr6:64408400-64426400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr6:64409000-64423800	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr6:64409200-64423600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr6:64409200-64423800	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr6:64409200-64423800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:64409800-64426600	Strong transcription	Primary T cells from cord blood	blood
36	chr6:64410400-64423600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:64411600-64423400	Strong transcription	GM12878-XiMat	blood
38	chr6:64412800-64423400	Strong transcription	Fetal Muscle Leg	muscle
39	chr6:64413400-64423600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr6:64413400-64423800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr6:64413400-64424200	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:64414000-64424000	Strong transcription	Fetal Brain Female	brain
43	chr6:64415400-64423600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:64415400-64431200	Weak transcription	Esophagus	oesophagus
45	chr6:64416600-64423600	Strong transcription	Thymus	Thymus
46	chr6:64417400-64423600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:64417400-64423600	Strong transcription	Hela-S3	cervix
48	chr6:64417600-64423800	Strong transcription	NH-A	brain
49	chr6:64417600-64424600	Strong transcription	Primary hematopoietic stem cells	blood
50	chr6:64417800-64423400	Strong transcription	Fetal Muscle Trunk	muscle

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