Variant report

Variant	rs12110791
Chromosome Location	chr6:92343607-92343608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:92319088..92321925-chr6:92341492..92343621,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16884587	1.00[EUR][1000 genomes]
rs58073777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59649453	1.00[EUR][1000 genomes]
rs59709077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6901764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017467	chr6:91802015-92417554	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv538360	chr6:91802015-92417554	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1034981	chr6:92280070-92530848	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1032777	chr6:92319154-92352802	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1018145	chr6:92328392-92951562	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv428491	chr6:92329694-92474678	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:92342000-92345000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:92342800-92343800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:92342800-92344200	Enhancers	Fetal Stomach	stomach
4	chr6:92342800-92345000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:92342800-92345400	Enhancers	Brain Germinal Matrix	brain
6	chr6:92343000-92343800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:92343000-92343800	Enhancers	Fetal Brain Male	brain
8	chr6:92343000-92345200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:92343200-92343800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:92343200-92343800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:92343200-92343800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:92343200-92343800	Enhancers	NHEK	skin
13	chr6:92343200-92344000	Enhancers	Fetal Kidney	kidney
14	chr6:92343200-92344000	Enhancers	Fetal Lung	lung
15	chr6:92343200-92344000	Enhancers	Ovary	ovary
16	chr6:92343200-92344600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr6:92343200-92344600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:92343200-92345000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr6:92343200-92345000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:92343200-92345000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr6:92343400-92343800	Enhancers	Fetal Muscle Leg	muscle
22	chr6:92343400-92345000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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