Variant report

Variant	rs59649453
Chromosome Location	chr6:92198844-92198845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12110791	1.00[EUR][1000 genomes]
rs16884336	1.00[EUR][1000 genomes]
rs16884359	1.00[EUR][1000 genomes]
rs16884587	1.00[EUR][1000 genomes]
rs4435919	1.00[EUR][1000 genomes]
rs57317173	1.00[EUR][1000 genomes]
rs58073777	1.00[EUR][1000 genomes]
rs59709077	1.00[EUR][1000 genomes]
rs6901764	1.00[EUR][1000 genomes]
rs6913577	1.00[EUR][1000 genomes]
rs6913611	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017467	chr6:91802015-92417554	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv538360	chr6:91802015-92417554	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1025913	chr6:92103872-92258396	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538361	chr6:92103872-92258396	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:92194000-92200400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:92195200-92200600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:92197800-92200600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:92198000-92200400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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