Variant report
| Variant | rs12111744 |
|---|---|
| Chromosome Location | chr7:21021498-21021499 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10231756 | 0.97[AFR][1000 genomes] |
| rs10246458 | 0.87[AFR][1000 genomes] |
| rs10246885 | 0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10270424 | 0.94[AFR][1000 genomes] |
| rs10499519 | 0.86[ASN][1000 genomes] |
| rs11769317 | 0.84[AFR][1000 genomes] |
| rs11975932 | 0.85[ASN][1000 genomes] |
| rs11979055 | 0.85[ASN][1000 genomes] |
| rs13340545 | 0.90[AFR][1000 genomes] |
| rs17143600 | 0.81[ASN][1000 genomes] |
| rs17143625 | 0.83[ASN][1000 genomes] |
| rs17143639 | 0.86[ASN][1000 genomes] |
| rs2270235 | 0.82[ASN][1000 genomes] |
| rs2390407 | 0.86[ASN][1000 genomes] |
| rs2390411 | 0.94[AFR][1000 genomes] |
| rs3810892 | 0.86[ASN][1000 genomes] |
| rs41304921 | 0.86[AFR][1000 genomes] |
| rs4610629 | 0.85[ASN][1000 genomes] |
| rs57938691 | 0.85[ASN][1000 genomes] |
| rs59393075 | 0.86[ASN][1000 genomes] |
| rs60715596 | 0.86[ASN][1000 genomes] |
| rs6943888 | 0.86[ASN][1000 genomes] |
| rs6946702 | 0.85[ASN][1000 genomes] |
| rs6947794 | 0.83[ASN][1000 genomes] |
| rs73263897 | 0.84[AFR][1000 genomes] |
| rs73268090 | 0.86[AFR][1000 genomes] |
| rs73268098 | 0.81[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030726 | chr7:20506095-21086719 | Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv830920 | chr7:21014535-21201580 | Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:21004200-21028000 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
