Variant report

Variant	rs10270424
Chromosome Location	chr7:21018240-21018241
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10229329	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10231756	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10240922	0.95[EUR][1000 genomes]
rs10246458	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10246885	0.85[AFR][1000 genomes]
rs10263153	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10265596	0.95[EUR][1000 genomes]
rs10275186	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10499520	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11766574	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11769317	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11773336	0.90[EUR][1000 genomes]
rs12111744	0.94[AFR][1000 genomes]
rs12532948	0.97[EUR][1000 genomes]
rs12533676	1.00[EUR][1000 genomes]
rs12668632	0.91[EUR][1000 genomes]
rs13221970	0.91[EUR][1000 genomes]
rs13246880	0.91[EUR][1000 genomes]
rs13340545	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2390411	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41304921	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4365987	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62441685	0.80[EUR][1000 genomes]
rs73263890	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73263897	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73268090	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73268098	0.85[AFR][1000 genomes]
rs73269804	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7784357	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7798796	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7811627	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030726	chr7:20506095-21086719	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830920	chr7:21014535-21201580	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21004200-21028000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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