Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10229329	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10231756	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10240922	0.90[EUR][1000 genomes]
rs10246458	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10263153	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10265596	0.90[EUR][1000 genomes]
rs10270424	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10275186	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10499520	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11766574	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11769317	0.98[EUR][1000 genomes]
rs11773336	0.85[EUR][1000 genomes]
rs12532948	0.92[EUR][1000 genomes]
rs12533676	0.95[EUR][1000 genomes]
rs12668632	0.86[EUR][1000 genomes]
rs13221970	0.86[EUR][1000 genomes]
rs13246880	0.86[EUR][1000 genomes]
rs13340545	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2390411	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs41304921	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4365987	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62441685	0.85[EUR][1000 genomes]
rs73263897	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268090	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73269804	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7784357	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7798796	0.97[EUR][1000 genomes]
rs7811627	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030726	chr7:20506095-21086719	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv887838	chr7:20862302-21016683	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:20992200-20994800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:20992400-20994800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:20992400-20994800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:20992600-20994800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:20992600-20994800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:20992600-20995000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:20993200-20994400	Weak transcription	Fetal Lung	lung
8	chr7:20993400-20994400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:20993400-20994400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:20993400-20994400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:20993400-20994600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:20993400-20996200	Weak transcription	Brain Germinal Matrix	brain
13	chr7:20993800-20995200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr7:20994000-20994400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr7:20994200-20994400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr7:20994200-20994800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr7:20994200-20995000	Enhancers	HMEC	breast

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