Variant report

Variant	rs10229329
Chromosome Location	chr7:20999419-20999420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10231756	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10240922	0.90[EUR][1000 genomes]
rs10246458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10263153	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10265596	0.90[EUR][1000 genomes]
rs10270424	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10275186	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10499520	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11766574	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11769317	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773336	0.85[EUR][1000 genomes]
rs12532948	0.92[EUR][1000 genomes]
rs12533676	0.95[EUR][1000 genomes]
rs12668632	0.86[EUR][1000 genomes]
rs13221970	0.86[EUR][1000 genomes]
rs13246880	0.86[EUR][1000 genomes]
rs13340545	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2390411	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs41304921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4365987	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62441685	0.85[EUR][1000 genomes]
rs73263890	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73263897	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268090	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73268098	0.90[ASN][1000 genomes]
rs73269804	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7784357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7798796	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7811627	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030726	chr7:20506095-21086719	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv887838	chr7:20862302-21016683	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:20995200-21003000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:20996200-20999800	Enhancers	Brain Germinal Matrix	brain
3	chr7:20997000-20999800	Enhancers	Fetal Lung	lung
4	chr7:20998600-20999600	Enhancers	HepG2	liver
5	chr7:20998600-21003000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:20998800-20999600	Enhancers	Rectal Mucosa Donor 31	rectum

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