Variant report

Variant	rs12112081
Chromosome Location	chr7:124097982-124097983
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12666460	0.96[ASN][1000 genomes]
rs17147180	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41353148	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4615511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7807899	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795113	chr7:123885477-124188665	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
3	esv1808414	chr7:123957376-124188665	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124092400-124099400	Weak transcription	Fetal Kidney	kidney
2	chr7:124095800-124100000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:124096600-124099400	Weak transcription	Fetal Stomach	stomach
4	chr7:124097200-124098000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:124097400-124101400	Enhancers	NHLF	lung
6	chr7:124097600-124098200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:124097600-124099800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:124097800-124098000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:124097800-124098200	Enhancers	NHEK	skin
10	chr7:124097800-124098400	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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