Variant report

Variant	rs7807899
Chromosome Location	chr7:124150069-124150070
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11766249	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11769918	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12112081	0.82[ASN][1000 genomes]
rs12666460	0.86[ASN][1000 genomes]
rs13232332	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17147221	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34000854	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34799484	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35966180	0.93[EUR][1000 genomes]
rs41353148	0.89[ASN][1000 genomes]
rs4615511	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs4731184	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4731185	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4731187	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66469910	0.90[EUR][1000 genomes]
rs6962872	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71576208	0.91[EUR][1000 genomes]
rs9768851	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795113	chr7:123885477-124188665	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
3	esv1808414	chr7:123957376-124188665	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv525687	chr7:124138187-124196444	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv608340	chr7:124138187-124196444	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124149800-124153800	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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