Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:124116352..124119655-chr7:124119768..124122495,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230268	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10954039	1.00[ASN][1000 genomes]
rs11766249	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769918	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530505	1.00[ASN][1000 genomes]
rs12536432	1.00[ASN][1000 genomes]
rs12539308	1.00[ASN][1000 genomes]
rs13228582	1.00[ASN][1000 genomes]
rs13232332	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13236030	1.00[ASN][1000 genomes]
rs1404409	1.00[ASN][1000 genomes]
rs17147221	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17472207	1.00[ASN][1000 genomes]
rs1917364	1.00[ASN][1000 genomes]
rs2402738	1.00[ASN][1000 genomes]
rs34000854	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34799484	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35966180	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36008540	1.00[ASN][1000 genomes]
rs4532546	1.00[ASN][1000 genomes]
rs4731184	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731185	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731187	0.93[EUR][1000 genomes]
rs6962872	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71576208	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7807899	0.90[EUR][1000 genomes]
rs9768851	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795113	chr7:123885477-124188665	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
3	esv1808414	chr7:123957376-124188665	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv970935	chr7:124120801-124121406	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124120600-124121600	Weak transcription	Fetal Heart	heart

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