Variant report
| Variant | rs35966180 |
|---|---|
| Chromosome Location | chr7:124133084-124133085 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10954039 | 1.00[ASN][1000 genomes] |
| rs11766249 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11769918 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12530505 | 1.00[ASN][1000 genomes] |
| rs12536432 | 1.00[ASN][1000 genomes] |
| rs12539308 | 1.00[ASN][1000 genomes] |
| rs13228582 | 1.00[ASN][1000 genomes] |
| rs13232332 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13236030 | 1.00[ASN][1000 genomes] |
| rs1404409 | 1.00[ASN][1000 genomes] |
| rs17147221 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17472207 | 1.00[ASN][1000 genomes] |
| rs1917364 | 1.00[ASN][1000 genomes] |
| rs2402738 | 1.00[ASN][1000 genomes] |
| rs34000854 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34799484 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36008540 | 1.00[ASN][1000 genomes] |
| rs4532546 | 1.00[ASN][1000 genomes] |
| rs4731184 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4731185 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4731187 | 0.96[EUR][1000 genomes] |
| rs66469910 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6962872 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71576208 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7807899 | 0.93[EUR][1000 genomes] |
| rs9768851 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1795113 | chr7:123885477-124188665 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv429809 | chr7:123937674-124835925 | Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 49 gene(s) | inside rSNPs | diseases |
| 3 | esv1808414 | chr7:123957376-124188665 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | esv2762702 | chr7:124121566-124149797 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:124131400-124137600 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
