Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:124270665..124272540-chr7:124297946..124299539,2	K562	blood:
2	chr7:124282474..124284467-chr7:124298276..124301225,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10500093	0.82[CEU][hapmap]
rs10954039	1.00[ASN][1000 genomes]
rs11766249	1.00[ASN][1000 genomes]
rs11769918	1.00[ASN][1000 genomes]
rs12530505	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536432	1.00[ASN][1000 genomes]
rs12539308	1.00[ASN][1000 genomes]
rs13228582	1.00[ASN][1000 genomes]
rs13232332	1.00[ASN][1000 genomes]
rs13236030	1.00[ASN][1000 genomes]
rs1404409	1.00[ASN][1000 genomes]
rs17147221	1.00[ASN][1000 genomes]
rs17472207	1.00[ASN][1000 genomes]
rs1917364	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2107931	1.00[ASN][1000 genomes]
rs34000854	1.00[ASN][1000 genomes]
rs34799484	1.00[ASN][1000 genomes]
rs35966180	1.00[ASN][1000 genomes]
rs36008540	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4532546	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731184	1.00[ASN][1000 genomes]
rs4731185	1.00[ASN][1000 genomes]
rs57462590	1.00[ASN][1000 genomes]
rs66469910	1.00[ASN][1000 genomes]
rs6962872	1.00[ASN][1000 genomes]
rs71576208	1.00[ASN][1000 genomes]
rs717240	1.00[ASN][1000 genomes]
rs9768851	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv831118	chr7:124172267-124347527	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3443061	chr7:124298941-124301389	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124299200-124302600	Weak transcription	Brain Hippocampus Middle	brain

Quick Search: