Variant report
Variant | rs12539308 |
---|---|
Chromosome Location | chr7:124182336-124182337 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10500093 | 0.88[CEU][hapmap] |
rs10954039 | 0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11766249 | 1.00[ASN][1000 genomes] |
rs11769918 | 1.00[ASN][1000 genomes] |
rs12530505 | 1.00[ASN][1000 genomes] |
rs12536432 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13228582 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13232332 | 1.00[ASN][1000 genomes] |
rs13236030 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1404409 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17147221 | 1.00[ASN][1000 genomes] |
rs17472207 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1917364 | 1.00[ASN][1000 genomes] |
rs2107931 | 1.00[ASN][1000 genomes] |
rs2402738 | 1.00[ASN][1000 genomes] |
rs34000854 | 1.00[ASN][1000 genomes] |
rs34799484 | 1.00[ASN][1000 genomes] |
rs35966180 | 1.00[ASN][1000 genomes] |
rs36008540 | 1.00[ASN][1000 genomes] |
rs4532546 | 1.00[ASN][1000 genomes] |
rs4731184 | 1.00[ASN][1000 genomes] |
rs4731185 | 1.00[ASN][1000 genomes] |
rs57462590 | 1.00[ASN][1000 genomes] |
rs66469910 | 1.00[ASN][1000 genomes] |
rs6962872 | 1.00[ASN][1000 genomes] |
rs71576208 | 1.00[ASN][1000 genomes] |
rs717240 | 1.00[ASN][1000 genomes] |
rs9768851 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv1795113 | chr7:123885477-124188665 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv429809 | chr7:123937674-124835925 | Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 49 gene(s) | inside rSNPs | diseases |
3 | esv1808414 | chr7:123957376-124188665 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv525687 | chr7:124138187-124196444 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | nsv608340 | chr7:124138187-124196444 | Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
6 | nsv831118 | chr7:124172267-124347527 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:124181800-124182600 | Enhancers | Fetal Stomach | stomach |
2 | chr7:124181800-124183200 | Weak transcription | Fetal Lung | lung |