Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10954039	1.00[ASN][1000 genomes]
rs12530505	1.00[ASN][1000 genomes]
rs12536432	1.00[ASN][1000 genomes]
rs12539308	1.00[ASN][1000 genomes]
rs12706628	1.00[CHD][hapmap]
rs13228582	1.00[ASN][1000 genomes]
rs13236030	1.00[ASN][1000 genomes]
rs1404409	1.00[ASN][1000 genomes]
rs1917364	1.00[ASN][1000 genomes]
rs2107931	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402738	1.00[ASN][1000 genomes]
rs36008540	1.00[ASN][1000 genomes]
rs4532546	1.00[ASN][1000 genomes]
rs4731204	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4731205	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57462590	1.00[ASN][1000 genomes]
rs6466946	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs724356	0.81[CEU][hapmap];1.00[GIH][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7802263	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9655844	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv1027091	chr7:124311742-124388908	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3446198	chr7:124358002-124586856	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv1802433	chr7:124365503-124385252	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124376800-124389400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:124377400-124379200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:124378000-124379000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:124378000-124379000	Enhancers	Brain Hippocampus Middle	brain
5	chr7:124378000-124380600	Enhancers	Brain Substantia Nigra	brain
6	chr7:124378400-124379000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:124378600-124384200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:124378600-124396600	Weak transcription	Fetal Lung	lung
9	chr7:124378800-124379000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:124378800-124379600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:124378800-124382400	Weak transcription	Brain Angular Gyrus	brain

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