Variant report

Variant	rs724356
Chromosome Location	chr7:124387374-124387375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2107931	0.87[EUR][1000 genomes]
rs4731204	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4731205	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs717240	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7802263	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9655844	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv1027091	chr7:124311742-124388908	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3446198	chr7:124358002-124586856	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs724356	LOC154872	cis	cerebellum	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124376800-124389400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:124378600-124396600	Weak transcription	Fetal Lung	lung
3	chr7:124383000-124394800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:124385000-124394800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:124385200-124396600	Weak transcription	Aorta	Aorta
6	chr7:124385400-124388400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:124385600-124388600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:124385800-124395000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:124386400-124387600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:124386600-124387400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:124386600-124387400	Strong transcription	Liver	Liver
12	chr7:124386600-124387400	Strong transcription	Esophagus	oesophagus
13	chr7:124386600-124387400	Strong transcription	Fetal Stomach	stomach
14	chr7:124386600-124387600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:124386600-124387800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr7:124386600-124389000	Enhancers	Brain Angular Gyrus	brain
17	chr7:124386800-124387400	Transcr. at gene 5' and 3'	Brain Hippocampus Middle	brain
18	chr7:124386800-124387400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
19	chr7:124386800-124387400	Strong transcription	NHLF	lung
20	chr7:124386800-124387600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:124387000-124387400	Flanking Active TSS	Brain Cingulate Gyrus	brain
22	chr7:124387000-124388200	Weak transcription	Pancreas	Pancrea
23	chr7:124387000-124391400	Weak transcription	Fetal Brain Female	brain
24	chr7:124387000-124394800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr7:124387200-124387400	Flanking Active TSS	Brain Substantia Nigra	brain
26	chr7:124387200-124387600	Weak transcription	Brain Anterior Caudate	brain

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