Variant report

Variant	rs1211284
Chromosome Location	chr11:64645871-64645872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:406)
CpG islands
(count:61)
Chromatin interactive
region (count:62)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:406 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:64645366-64646911	ECC-1	luminal epithelium:	n/a	n/a
2	RELA	chr11:64645772-64646606	GM12892	blood:	n/a	n/a
3	RAD21	chr11:64645696-64646657	IMR90	lung:	n/a	n/a
4	E2F6	chr11:64645503-64646658	K562	blood:	n/a	chr11:64645837-64645852 chr11:64645504-64645513 chr11:64646050-64646059
5	NFATC1	chr11:64645834-64646566	GM12878	blood:	n/a	n/a
6	POLR2A	chr11:64645536-64647176	HL-60	blood:	n/a	n/a
7	TAF1	chr11:64645463-64646622	HepG2	liver:	n/a	n/a
8	RAD21	chr11:64645725-64646309	H1-hESC	embryonic stem cell:	n/a	n/a
9	THAP1	chr11:64645641-64646269	K562	blood:	n/a	n/a
10	WRNIP1	chr11:64643992-64646466	GM12878	blood:	n/a	n/a
11	POU2F2	chr11:64645828-64646201	GM12878	blood:	n/a	n/a
12	POLR2A	chr11:64645761-64646751	HepG2	liver:	n/a	n/a
13	RELA	chr11:64645796-64646558	GM18526	blood:	n/a	n/a
14	TCF7L2	chr11:64645870-64646166	PANC-1	pancreas:	n/a	n/a
15	MAX	chr11:64645323-64646944	HepG2	liver:	n/a	n/a
16	RAD21	chr11:64645826-64646302	H1-hESC	embryonic stem cell:	n/a	n/a
17	POLR2A	chr11:64645829-64646928	MCF10A-Er-Src	breast:	n/a	n/a
18	BHLHE40	chr11:64645790-64647065	GM12878	blood:	n/a	n/a
19	BACH1	chr11:64645633-64646489	H1-hESC	embryonic stem cell:	n/a	n/a
20	TAF1	chr11:64645840-64646570	GM12891	blood:	n/a	n/a
21	TCF12	chr11:64645794-64646710	ECC-1	luminal epithelium:	n/a	n/a
22	HA-E2F1	chr11:64645721-64646904	MCF-7	breast:	n/a	chr11:64646050-64646059
23	POLR2A	chr11:64645802-64647273	K562	blood:	n/a	n/a
24	RELA	chr11:64645778-64647276	GM12891	blood:	n/a	chr11:64646925-64646934 chr11:64646925-64646934
25	UBTF	chr11:64645526-64646776	K562	blood:	n/a	n/a
26	REST	chr11:64645604-64646855	A549	lung:	n/a	n/a
27	STAT1	chr11:64645745-64646572	GM12878	blood:	n/a	n/a
28	CTCF	chr11:64645541-64646399	K562	blood:	n/a	chr11:64646077-64646093
29	JUND	chr11:64645781-64646767	MCF-7	breast:	n/a	n/a
30	POU2F2	chr11:64645803-64646536	GM12878	blood:	n/a	n/a
31	RCOR1	chr11:64644050-64647190	IMR90	lung:	n/a	n/a
32	PBX3	chr11:64645782-64647253	A549	lung:	n/a	n/a
33	SIN3AK20	chr11:64645343-64646736	SK-N-SH	brain:	n/a	n/a
34	MYC	chr11:64645499-64646918	K562	blood:	n/a	n/a
35	TAF1	chr11:64645686-64646779	H1-hESC	embryonic stem cell:	n/a	n/a
36	TAF1	chr11:64645450-64646617	HepG2	liver:	n/a	n/a
37	YY1	chr11:64645789-64646693	ECC-1	luminal epithelium:	n/a	n/a
38	MAX	chr11:64645448-64646717	GM12878	blood:	n/a	n/a
39	POLR2A	chr11:64645734-64647588	HCT-116	colon:	n/a	n/a
40	TAF1	chr11:64645787-64646635	GM12892	blood:	n/a	n/a
41	MAX	chr11:64645346-64647079	A549	lung:	n/a	n/a
42	BHLHE40	chr11:64645764-64646655	HepG2	liver:	n/a	n/a
43	HEY1	chr11:64645678-64646912	K562	blood:	n/a	n/a
44	REST	chr11:64645865-64646231	K562	blood:	n/a	n/a
45	SP4	chr11:64645864-64646456	H1-hESC	embryonic stem cell:	n/a	chr11:64646161-64646172 chr11:64646205-64646216
46	BRCA1	chr11:64645657-64646677	Hela-S3	cervix:	n/a	n/a
47	RELA	chr11:64645692-64647595	GM18505	blood:	n/a	chr11:64646925-64646934 chr11:64646925-64646934
48	CTCF	chr11:64645740-64645890	GM12872	blood:	n/a	n/a
49	MYC	chr11:64645572-64646740	K562	blood:	n/a	n/a
50	BCLAF1	chr11:64645674-64646659	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:64645847-64645897	MCF10A-Er-Src	breast:	n/a
2	chr11:64645847-64645897	RPTEC	kidney:	n/a
3	chr11:64645847-64645897	IMR90	lung:	fetal
4	chr11:64645847-64645897	PrEC	prostate:	n/a
5	chr11:64645847-64645897	AG10803	skin:	n/a
6	chr11:64645847-64645897	SK-N-SH_RA	brain:	n/a
7	chr11:64645847-64645897	HNPCEpiC	eye:	n/a
8	chr11:64645847-64645897	HCPEpiC	choroid plexus:	n/a
9	chr11:64645847-64645897	HCM	heart:	n/a
10	chr11:64645847-64645897	PANC-1	pancreas:	n/a
11	chr11:64645847-64645897	AG04450	lung:	fetal
12	chr11:64645847-64645897	LNCaP	prostate:	n/a
13	chr11:64645847-64645897	GM12892	blood:	n/a
14	chr11:64645847-64645897	SK-N-SH	brain:	n/a
15	chr11:64645847-64645897	HIPEpiC	eye:	n/a
16	chr11:64645847-64645897	GM19239	blood:	n/a
17	chr11:64645847-64645897	HRPEpiC	eye:	n/a
18	chr11:64645847-64645897	MCF-7	breast:	n/a
19	chr11:64645847-64645897	NB4	blood:	n/a
20	chr11:64645847-64645897	AoSMC	blood vessel:	n/a
21	chr11:64645847-64645897	CMK	blood:	n/a
22	chr11:64645847-64645897	PFSK-1	brain:	n/a
23	chr11:64645847-64645897	ECC-1	luminal epithelium:	n/a
24	chr11:64645847-64645897	BE2_C	brain:	n/a
25	chr11:64645847-64645897	NT2-D1	testis:	n/a
26	chr11:64645847-64645897	HEEpiC	esophagus:	n/a
27	chr11:64645847-64645897	Jurkat	blood:	n/a
28	chr11:64645847-64645897	SK-N-MC	brain:	n/a
29	chr11:64645847-64645897	BJ	skin:	n/a
30	chr11:64645847-64645897	HCF	heart:	n/a
31	chr11:64645847-64645897	HUVEC	blood vessel:	n/a
32	chr11:64645847-64645897	NH-A	brain:	n/a
33	chr11:64645847-64645897	AG09319	gingival:	n/a
34	chr11:64645847-64645897	HRE	kidney:	n/a
35	chr11:64645847-64645897	GM12891	blood:	n/a
36	chr11:64645847-64645897	Caco-2	colon:	n/a
37	chr11:64645847-64645897	U87	brain:	n/a
38	chr11:64645847-64645897	K562	blood:	n/a
39	chr11:64645847-64645897	ovcar-3	ovarian:	n/a
40	chr11:64645847-64645897	AG04449	skin:	fetal
41	chr11:64645847-64645897	H1-hESC	embryonic stem cell:	embryo
42	chr11:64645847-64645897	HAEpiC	amniotic membrane:	n/a
43	chr11:64645847-64645897	A549	lung:	n/a
44	chr11:64645847-64645897	HPAEpiC	pulmonary alveolar:	n/a
45	chr11:64645847-64645897	HepG2	liver:	n/a
46	chr11:64645847-64645897	NHDF-neo	bronchial:	n/a
47	chr11:64645847-64645897	HEK293	kidney:	embryo
48	chr11:64645847-64645897	AG09309	skin:	n/a
49	chr11:64645847-64645897	GM12878	blood:	n/a
50	chr11:64645847-64645897	Hepatocyte	liver:	n/a

(count:62 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr11:64645775..64646467-chr17:73150096..73150665,2	Hela-S3	cervix:
2	chr11:64645762..64646606-chr22:38239708..38240538,2	NB4	blood:
3	chr11:64644496..64646920-chr11:64764507..64767051,3	K562	blood:
4	chr11:64576838..64579724-chr11:64644602..64648695,4	K562	blood:
5	chr11:64643787..64646984-chr11:64875593..64882466,11	MCF-7	breast:
6	chr11:64645037..64647722-chr11:64889185..64892415,3	MCF-7	breast:
7	chr11:64644179..64646943-chr11:64683100..64687957,8	MCF-7	breast:
8	chr11:64645458..64648042-chr11:64679788..64682013,2	MCF-7	breast:
9	chr11:64645500..64648132-chr11:64701780..64703587,2	MCF-7	breast:
10	chr1:28975071..28975739-chr11:64645551..64646275,2	Hela-S3	cervix:
11	chr11:64566980..64568493-chr11:64644627..64647594,2	MCF-7	breast:
12	chr11:64506827..64509728-chr11:64644773..64647136,2	K562	blood:
13	chr11:64489296..64491902-chr11:64644473..64646300,2	MCF-7	breast:
14	chr1:149223511..149224309-chr11:64645771..64646505,2	Hela-S3	cervix:
15	chr11:64643589..64645871-chr11:64883152..64885290,3	K562	blood:
16	chr10:6244886..6245402-chr11:64645653..64646532,2	Hela-S3	cervix:
17	chr11:64645266..64647348-chr11:64764267..64766007,3	K562	blood:
18	chr11:64644851..64646758-chr11:64889703..64891986,3	K562	blood:
19	chr11:64644621..64647085-chr11:64869842..64873650,4	MCF-7	breast:
20	chr11:64645360..64645935-chr20:60961942..60962622,2	Hela-S3	cervix:
21	chr11:64643788..64647961-chr11:64848883..64851896,4	K562	blood:
22	chr11:64645627..64646423-chr17:56736436..56736984,2	MCF-7	breast:
23	chr11:64644806..64648507-chr11:64877927..64882201,4	MCF-7	breast:
24	chr11:64643878..64648186-chr11:64793107..64797470,5	K562	blood:
25	chr11:64644520..64646273-chr11:64683342..64685362,3	MCF-7	breast:
26	chr11:64598378..64602131-chr11:64643786..64647178,3	K562	blood:
27	chr11:64568225..64570801-chr11:64644714..64647592,2	MCF-7	breast:
28	chr11:64544833..64546350-chr11:64643462..64646283,2	K562	blood:
29	chr11:64578009..64579724-chr11:64644602..64647037,2	K562	blood:
30	chr11:64543733..64546227-chr11:64645757..64648257,3	K562	blood:
31	chr11:64643590..64647956-chr11:64883297..64887661,6	MCF-7	breast:
32	chr11:64643435..64646351-chr11:64890486..64893627,3	K562	blood:
33	chr11:64644503..64648099-chr11:64683052..64686363,9	K562	blood:
34	chr11:62494690..62495620-chr11:64645368..64646318,2	Hela-S3	cervix:
35	chr11:64644475..64647391-chr11:64946794..64949864,4	K562	blood:
36	chr11:64575575..64578460-chr11:64644399..64646025,3	MCF-7	breast:
37	chr11:64644648..64646149-chr11:64852476..64854664,2	K562	blood:
38	chr11:64643973..64646390-chr11:64783747..64786510,2	MCF-7	breast:
39	chr11:64645740..64646489-chr2:171785407..171786208,2	HCT-116	colon:
40	chr11:64644499..64647040-chr17:57916781..57919732,2	MCF-7	breast:
41	chr11:64642261..64647543-chr11:64882719..64886329,5	MCF-7	breast:
42	chr11:64642970..64646207-chr11:64900095..64903878,3	K562	blood:
43	chr11:64645804..64646473-chr2:24163389..24164133,2	Hela-S3	cervix:
44	chr11:64644520..64646761-chr11:64879281..64881959,2	K562	blood:
45	chr11:64645160..64647408-chr11:65080658..65083337,2	MCF-7	breast:
46	chr11:64644921..64647626-chr11:64948017..64950319,4	K562	blood:
47	chr11:64645580..64646560-chrX:24167900..24168635,2	Hela-S3	cervix:
48	chr11:64616076..64616705-chr11:64645398..64645972,2	MCF-7	breast:
49	chr11:64568638..64571349-chr11:64644530..64646635,3	MCF-7	breast:
50	chr11:64645625..64647922-chr11:64900749..64903645,2	MCF-7	breast:

No data

Variant related genes	Relation type
EHD1	TF binding region
ENSG00000230835	TF binding region
ENSG00000230835	CpG island
EHD1	CpG island
ENSG00000162298	Chromatin interaction
ENSG00000115806	Chromatin interaction
ENSG00000149735	Chromatin interaction
ENSG00000173960	Chromatin interaction
ENSG00000168061	Chromatin interaction
ENSG00000189159	Chromatin interaction
ENSG00000133895	Chromatin interaction
ENSG00000162300	Chromatin interaction
ENSG00000149806	Chromatin interaction
ENSG00000149792	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000110025	Chromatin interaction
ENSG00000270775	Chromatin interaction
ENSG00000152348	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000213465	Chromatin interaction
ENSG00000254614	Chromatin interaction
ENSG00000173818	Chromatin interaction
ENSG00000273003	Chromatin interaction
ENSG00000187066	Chromatin interaction
ENSG00000149798	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000207945	Chromatin interaction
ENSG00000014216	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000270103	Chromatin interaction
ENSG00000269038	Chromatin interaction
ENSG00000100124	Chromatin interaction
ENSG00000168066	Chromatin interaction
ENSG00000263069	Chromatin interaction
ENSG00000005889	Chromatin interaction
ENSG00000168067	Chromatin interaction
ENSG00000110076	Chromatin interaction
ENSG00000168062	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000254501	Chromatin interaction
ENSG00000162222	Chromatin interaction
ENSG00000234857	Chromatin interaction
ENSG00000171858	Chromatin interaction
ENSG00000068971	Chromatin interaction
ENSG00000146670	Chromatin interaction
ENSG00000170525	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000171219	Chromatin interaction
ENSG00000214753	Chromatin interaction
ENSG00000206737	Chromatin interaction
ENSG00000068831	Chromatin interaction
ENSG00000110046	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10897533	1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12573	0.82[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs12801172	0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17146413	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2007521	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2077026	0.96[ASN][1000 genomes]
rs3741391	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3893108	0.93[ASN][1000 genomes]
rs3936999	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs3937000	0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs41381745	0.96[ASN][1000 genomes]
rs4930280	0.92[ASN][1000 genomes]
rs4930281	0.93[ASN][1000 genomes]
rs4930685	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.85[MKK][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57851864	0.98[ASN][1000 genomes]
rs589556	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs602347	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs607569	0.93[ASN][1000 genomes]
rs620066	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs621608	0.96[ASN][1000 genomes]
rs622611	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs635722	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs641623	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs649208	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs653225	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs654580	0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs656982	0.89[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7126744	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7926812	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7927560	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7943238	0.87[ASN][1000 genomes]
rs7944276	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7949887	0.81[CHB][hapmap]
rs7952306	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7952567	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528506	chr11:64345448-64701030	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
2	nsv897695	chr11:64357072-64701030	Weak transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
3	nsv897700	chr11:64447420-64701030	Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1071 gene(s)	inside rSNPs	diseases
4	nsv897704	chr11:64584987-64701030	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
5	nsv897705	chr11:64591679-64701030	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
6	nsv897706	chr11:64591679-64721908	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
7	nsv897707	chr11:64600002-64701030	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
8	nsv897708	chr11:64602757-64695271	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
9	nsv360	chr11:64632395-64659636	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1003 gene(s)	inside rSNPs	diseases
10	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
11	nsv555208	chr11:64645119-64771179	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1029 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1211284	EHD1	cis	lymphoblastoid	seeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64641800-64646000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
2	chr11:64641800-64646000	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
3	chr11:64642000-64646000	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
4	chr11:64642400-64646000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
5	chr11:64642600-64646400	Active TSS	HSMMtube	muscle
6	chr11:64642600-64646800	Active TSS	GM12878-XiMat	blood
7	chr11:64643400-64646000	Flanking Active TSS	Primary hematopoietic stem cells	blood
8	chr11:64643400-64647000	Active TSS	Aorta	Aorta
9	chr11:64643600-64646000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:64643600-64646600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
11	chr11:64643600-64646600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:64643800-64646600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
13	chr11:64643800-64647200	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr11:64644000-64646000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:64644000-64646400	Active TSS	Primary T killer memory cells from peripheral blood	blood
16	chr11:64644000-64646800	Active TSS	Small Intestine	intestine
17	chr11:64644200-64646000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:64644200-64646600	Active TSS	Primary T helper naive cells from peripheral blood	blood
19	chr11:64644200-64646600	Active TSS	NHEK	skin
20	chr11:64644200-64646800	Active TSS	Sigmoid Colon	Sigmoid Colon
21	chr11:64644200-64646800	Active TSS	NHDF-Ad	bronchial
22	chr11:64644200-64647000	Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr11:64644400-64646400	Active TSS	Placenta Amnion	Placenta Amnion
24	chr11:64644400-64646600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:64644400-64646600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:64644400-64646600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:64644400-64646600	Active TSS	HMEC	breast
28	chr11:64644400-64646800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:64644400-64646800	Active TSS	Fetal Intestine Large	intestine
30	chr11:64644400-64646800	Active TSS	NHLF	lung
31	chr11:64644400-64647000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:64644400-64647000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:64644400-64647000	Active TSS	Colon Smooth Muscle	Colon
34	chr11:64644600-64646600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:64644600-64646600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
36	chr11:64644600-64646800	Active TSS	A549	lung
37	chr11:64644600-64646800	Active TSS	HSMM	muscle
38	chr11:64644800-64646600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:64644800-64646600	Active TSS	Breast Myoepithelial Primary Cells	Breast
40	chr11:64644800-64646600	Bivalent/Poised TSS	HepG2	liver
41	chr11:64644800-64646800	Active TSS	Fetal Heart	heart
42	chr11:64644800-64646800	Active TSS	Gastric	stomach
43	chr11:64644800-64646800	Active TSS	Lung	lung
44	chr11:64644800-64646800	Active TSS	Stomach Mucosa	stomach
45	chr11:64644800-64647000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
46	chr11:64644800-64647000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr11:64644800-64647000	Active TSS	Left Ventricle	heart
48	chr11:64644800-64647400	Active TSS	H9 Cell Line	embryonic stem cell
49	chr11:64645000-64646000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:64645000-64646400	Active TSS	Primary B cells from peripheral blood	blood

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