Variant report
| Variant | rs12115034 |
|---|---|
| Chromosome Location | chr8:19928924-19928925 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:19927924..19930006-chr8:20054112..20056790,2 | K562 | blood: | |
| 2 | chr8:19922124..19924701-chr8:19926606..19930260,4 | K562 | blood: | |
| 3 | chr8:19928488..19931402-chr8:19934258..19936507,2 | K562 | blood: | |
| 4 | chr8:19917481..19922077-chr8:19926619..19931502,5 | K562 | blood: | |
| 5 | chr8:19869466..19870969-chr8:19928497..19931121,2 | K562 | blood: | |
| 6 | chr8:19928488..19931156-chr8:19934258..19936000,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000147416 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs11989335 | 1.00[AMR][1000 genomes] |
| rs262 | 1.00[AMR][1000 genomes] |
| rs56952689 | 1.00[AMR][1000 genomes] |
| rs57996813 | 1.00[AMR][1000 genomes] |
| rs58645035 | 1.00[AMR][1000 genomes] |
| rs59808638 | 1.00[AMR][1000 genomes] |
| rs60424506 | 1.00[AMR][1000 genomes] |
| rs60929355 | 1.00[AMR][1000 genomes] |
| rs61274012 | 1.00[AMR][1000 genomes] |
| rs7001486 | 1.00[AMR][1000 genomes] |
| rs73599687 | 1.00[AMR][1000 genomes] |
| rs73600088 | 1.00[AMR][1000 genomes] |
| rs73601683 | 1.00[AMR][1000 genomes] |
| rs73602327 | 1.00[AMR][1000 genomes] |
| rs73602336 | 1.00[AMR][1000 genomes] |
| rs73602337 | 1.00[AMR][1000 genomes] |
| rs73602344 | 1.00[AMR][1000 genomes] |
| rs73606088 | 1.00[AMR][1000 genomes] |
| rs73606089 | 1.00[AMR][1000 genomes] |
| rs73608005 | 1.00[AMR][1000 genomes] |
| rs73612187 | 1.00[AMR][1000 genomes] |
| rs73612194 | 1.00[AMR][1000 genomes] |
| rs73612196 | 1.00[AMR][1000 genomes] |
| rs73612198 | 1.00[AMR][1000 genomes] |
| rs73612199 | 1.00[AMR][1000 genomes] |
| rs73614229 | 1.00[AMR][1000 genomes] |
| rs73614265 | 1.00[AMR][1000 genomes] |
| rs7819964 | 1.00[AMR][1000 genomes] |
| rs7825694 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv610759 | chr8:19561997-20068842 | Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033511 | chr8:19751299-20625091 | Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv530877 | chr8:19873053-20593254 | Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 4 | nsv890633 | chr8:19875100-19985382 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:19919600-19931600 | Weak transcription | Lung | lung |
| 2 | chr8:19921600-19932200 | Weak transcription | Left Ventricle | heart |
| 3 | chr8:19928400-19929200 | Active TSS | K562 | blood |
