Variant report

Variant	rs61274012
Chromosome Location	chr8:19802343-19802344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:19800611..19802825-chr8:20055037..20057972,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12115034	1.00[AMR][1000 genomes]
rs262	1.00[AMR][1000 genomes]
rs56952689	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57996813	1.00[AMR][1000 genomes]
rs60929355	1.00[AMR][1000 genomes]
rs7001486	1.00[AMR][1000 genomes]
rs73599687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600088	1.00[AMR][1000 genomes]
rs73601683	1.00[AMR][1000 genomes]
rs73606088	1.00[AMR][1000 genomes]
rs73606089	1.00[AMR][1000 genomes]
rs73608005	1.00[AMR][1000 genomes]
rs73612187	1.00[AMR][1000 genomes]
rs73612194	1.00[AMR][1000 genomes]
rs73612196	1.00[AMR][1000 genomes]
rs73612198	1.00[AMR][1000 genomes]
rs73612199	1.00[AMR][1000 genomes]
rs73614229	1.00[AMR][1000 genomes]
rs73614265	1.00[AMR][1000 genomes]
rs7825694	1.00[AMR][1000 genomes]
rs7836566	1.00[AMR][1000 genomes]
rs7844257	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498082	chr8:19722435-19873112	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv32767	chr8:19740189-19873082	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19798200-19818400	Weak transcription	K562	blood
2	chr8:19798400-19805800	Weak transcription	Aorta	Aorta
3	chr8:19798600-19808400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:19798600-19813400	Weak transcription	Ovary	ovary
5	chr8:19798600-19824200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:19798800-19805800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:19799000-19813200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr8:19799400-19807200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:19799600-19805800	Weak transcription	Lung	lung
10	chr8:19799800-19813000	Weak transcription	Fetal Brain Female	brain
11	chr8:19799800-19819600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:19800000-19802600	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:19800000-19805600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr8:19800400-19802800	Enhancers	Fetal Heart	heart
15	chr8:19800800-19802400	Weak transcription	Psoas Muscle	Psoas
16	chr8:19800800-19823000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr8:19801000-19805800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:19801000-19805800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr8:19801400-19811000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr8:19801800-19802800	Transcr. at gene 5' and 3'	Adipose Nuclei	Adipose
21	chr8:19801800-19805600	Weak transcription	Brain Anterior Caudate	brain
22	chr8:19802000-19802400	Strong transcription	Left Ventricle	heart
23	chr8:19802000-19805200	Weak transcription	Right Ventricle	heart
24	chr8:19802200-19802600	Enhancers	Fetal Brain Male	brain
25	chr8:19802200-19802800	Strong transcription	Fetal Lung	lung

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