Variant report

Variant	rs12115787
Chromosome Location	chr9:72851646-72851647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10117899	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10780924	0.81[EUR][1000 genomes]
rs10868742	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1112937	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11142365	0.81[EUR][1000 genomes]
rs11142379	0.81[EUR][1000 genomes]
rs11142380	0.81[EUR][1000 genomes]
rs11142381	0.81[EUR][1000 genomes]
rs1180081	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1180083	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1180086	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1180088	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1180091	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1180094	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1180099	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1180110	0.84[EUR][1000 genomes]
rs1180111	0.84[EUR][1000 genomes]
rs1180127	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1927096	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1927100	0.88[EUR][1000 genomes]
rs2148857	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2148859	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2182734	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2182735	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2182737	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2182738	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2309644	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2479033	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2768643	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2768646	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2773363	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2773366	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4744993	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4744999	0.87[EUR][1000 genomes]
rs68171482	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7019147	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7020447	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7047789	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7869429	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72828000-72858800	Weak transcription	Gastric	stomach
2	chr9:72833600-72856800	Weak transcription	Aorta	Aorta
3	chr9:72844400-72855400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:72845000-72858600	Weak transcription	Fetal Stomach	stomach
5	chr9:72845000-72859200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:72845000-72870400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:72846200-72854600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:72847400-72857600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr9:72847400-72870800	Weak transcription	Pancreas	Pancrea
10	chr9:72849600-72855400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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