Variant report

Variant rs12117419
Chromosome Location chr1:144990491-144990492
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:144983000-144997600 Weak transcription Primary T helper naive cells from peripheral blood blood
2 chr1:144983200-144992000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
3 chr1:144983400-144991800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr1:144983400-144991800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
5 chr1:144983400-144994000 Weak transcription H1 Cell Line embryonic stem cell
6 chr1:144983400-144994200 Weak transcription ES-I3 Cell Line embryonic stem cell
7 chr1:144983400-144994200 Weak transcription iPS-18 Cell Line embryonic stem cell
8 chr1:144983800-144991800 Weak transcription HUES6 Cell Line embryonic stem cell
9 chr1:144985800-144993400 Enhancers Pancreatic Islets Pancreatic Islet
10 chr1:144987000-144993000 Weak transcription Lung lung
11 chr1:144987000-144994400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr1:144987800-144991000 Enhancers Primary monocytes fromperipheralblood blood
13 chr1:144987800-144991200 Enhancers Brain Hippocampus Middle brain
14 chr1:144987800-144991800 Weak transcription Primary T killer memory cells from peripheral blood blood
15 chr1:144988000-144991000 Enhancers Brain Substantia Nigra brain
16 chr1:144988000-144996400 Genic enhancers Brain Germinal Matrix brain
17 chr1:144988600-144990600 Flanking Active TSS HSMMtube muscle
18 chr1:144988600-144991600 Flanking Active TSS Skeletal Muscle Male skeletal muscle
19 chr1:144988600-144991800 Weak transcription Primary T cells from cord blood blood
20 chr1:144988800-144991800 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
21 chr1:144989000-144990600 Flanking Active TSS Skeletal Muscle Female skeletal muscle
22 chr1:144989000-144992200 Enhancers Fetal Brain Female brain
23 chr1:144989000-144993000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
24 chr1:144989000-144993800 Transcr. at gene 5' and 3' K562 blood
25 chr1:144989200-144990600 Enhancers Primary B cells from cord blood blood
26 chr1:144989200-144990600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
27 chr1:144989600-144991200 Enhancers Fetal Intestine Small intestine
28 chr1:144989600-144992400 Enhancers Fetal Intestine Large intestine
29 chr1:144989800-144990600 Enhancers HMEC breast
30 chr1:144989800-144990600 Enhancers Osteobl bone
31 chr1:144989800-144990800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr1:144989800-144990800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
33 chr1:144989800-144991000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
34 chr1:144989800-144991000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
35 chr1:144989800-144991000 Enhancers Rectal Smooth Muscle rectum
36 chr1:144989800-144991200 Enhancers Brain Angular Gyrus brain
37 chr1:144989800-144991200 Enhancers Brain Inferior Temporal Lobe brain
38 chr1:144989800-144991200 Weak transcription Esophagus oesophagus
39 chr1:144989800-144991400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr1:144989800-144991600 Flanking Active TSS Fetal Heart heart
41 chr1:144989800-144991800 Weak transcription Placenta Amnion Placenta Amnion
42 chr1:144989800-144991800 Active TSS Right Ventricle heart
43 chr1:144989800-144991800 Enhancers NHLF lung
44 chr1:144989800-144992800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr1:144989800-144994200 Weak transcription Fetal Kidney kidney
46 chr1:144989800-144995400 Active TSS Left Ventricle heart
47 chr1:144990000-144990600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
48 chr1:144990000-144990600 Enhancers Colonic Mucosa Colon
49 chr1:144990000-144990800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
50 chr1:144990000-144990800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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