Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11206872	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11206884	0.82[EUR][1000 genomes]
rs12021768	0.81[EUR][1000 genomes]
rs12021851	0.83[EUR][1000 genomes]
rs12032999	0.82[EUR][1000 genomes]
rs12070903	0.83[ASN][1000 genomes]
rs1986660	0.82[EUR][1000 genomes]
rs2064421	0.81[ASN][1000 genomes]
rs2064422	0.81[ASN][1000 genomes]
rs2263427	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2263428	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2404986	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2404987	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2404992	0.80[EUR][1000 genomes]
rs2404993	0.80[EUR][1000 genomes]
rs2746338	0.81[ASN][1000 genomes]
rs2796492	0.81[ASN][1000 genomes]
rs2796493	0.81[ASN][1000 genomes]
rs2796495	0.81[ASN][1000 genomes]
rs2796496	0.81[ASN][1000 genomes]
rs2796499	0.81[ASN][1000 genomes]
rs2796534	0.81[ASN][1000 genomes]
rs2796541	0.81[ASN][1000 genomes]
rs4548471	0.82[EUR][1000 genomes]
rs4568857	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61774285	0.88[EUR][1000 genomes]
rs61774287	0.81[EUR][1000 genomes]
rs61774288	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6671760	0.83[ASN][1000 genomes]
rs715404	0.81[ASN][1000 genomes]
rs715405	0.81[ASN][1000 genomes]
rs72666470	0.82[EUR][1000 genomes]
rs963528	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2762142	chr1:57082459-57094901	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv945967	chr1:57084318-57086467	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57083200-57091600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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