Variant report

Variant	rs2404986
Chromosome Location	chr1:57084155-57084156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11206872	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206875	0.82[CEU][hapmap]
rs11206884	0.90[EUR][1000 genomes]
rs1124900	0.94[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs12021768	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12021851	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12032999	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12046428	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12121876	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1418442	0.82[ASW][hapmap]
rs1986660	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2245475	0.85[ASN][1000 genomes]
rs2263427	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2263428	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2404987	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2404992	0.88[EUR][1000 genomes]
rs2404993	0.88[EUR][1000 genomes]
rs2746348	0.94[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs2746349	0.94[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs4548471	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4568857	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61774285	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61774287	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61774288	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6588643	0.83[ASN][1000 genomes]
rs6683935	0.83[ASN][1000 genomes]
rs72666470	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7419053	0.82[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2762142	chr1:57082459-57094901	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57082600-57084200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:57083200-57091600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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