Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10749709	0.85[JPT][hapmap];0.83[MEX][hapmap];0.80[ASN][1000 genomes]
rs10889001	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10889002	0.80[ASN][1000 genomes]
rs10889003	0.80[ASN][1000 genomes]
rs11206870	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11206873	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11206879	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11206891	0.80[ASN][1000 genomes]
rs12119770	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12129602	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12134054	0.80[ASN][1000 genomes]
rs12402675	0.91[ASN][1000 genomes]
rs12756787	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12757089	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12759063	0.82[ASN][1000 genomes]
rs2051040	0.81[ASN][1000 genomes]
rs2143749	0.85[JPT][hapmap]
rs2404987	0.82[CEU][hapmap]
rs2746342	0.85[JPT][hapmap]
rs4451572	0.81[ASN][1000 genomes]
rs4912408	0.85[JPT][hapmap]
rs4912411	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs7511827	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2762142	chr1:57082459-57094901	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11206875	BSND	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57083200-57091600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:57085800-57089600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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