Variant report

Variant	rs10889001
Chromosome Location	chr1:57106349-57106350
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10749709	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10889002	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10889003	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11206870	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11206873	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11206875	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11206879	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11206891	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12119770	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12129602	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12134054	0.83[ASN][1000 genomes]
rs12402675	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12405291	0.82[ASN][1000 genomes]
rs12756787	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12757089	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12759063	0.85[ASN][1000 genomes]
rs2051040	0.84[ASN][1000 genomes]
rs4451572	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7511827	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57103200-57109000	Weak transcription	Fetal Heart	heart
2	chr1:57105600-57109000	Weak transcription	HepG2	liver
3	chr1:57105600-57109200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:57105600-57109400	Weak transcription	NHDF-Ad	bronchial
5	chr1:57105600-57110000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:57105600-57110200	Weak transcription	HSMMtube	muscle
7	chr1:57105800-57108400	Weak transcription	Hela-S3	cervix
8	chr1:57105800-57109800	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links