Variant report

Variant	rs7511827
Chromosome Location	chr1:57101710-57101711
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10889001	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11206870	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11206873	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11206875	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11206879	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12119770	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12129602	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12756787	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12757089	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57098400-57103800	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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