Variant report

Variant	rs12125537
Chromosome Location	chr1:215087655-215087656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10864140	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120443	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12071211	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117161	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137826	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023849	1.00[ASN][1000 genomes]
rs17601260	1.00[ASN][1000 genomes]
rs2601653	1.00[ASN][1000 genomes]
rs478014	1.00[ASN][1000 genomes]
rs486282	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs498942	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs502241	1.00[ASN][1000 genomes]
rs6690671	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs73076218	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873167	chr1:214950361-215116947	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12125537	PRM1	trans	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215085800-215092200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:215085800-215092400	Weak transcription	Gastric	stomach
3	chr1:215085800-215097800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:215087000-215087800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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