Variant report

Variant	rs12126734
Chromosome Location	chr1:47418426-47418427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10789496	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10890429	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10890430	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10890432	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11211409	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11211411	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211412	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12022394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12027446	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12031766	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12041693	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12117798	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12142787	0.90[TSI][hapmap]
rs12758361	0.80[EUR][1000 genomes]
rs1847228	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1847230	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2297813	0.90[TSI][hapmap]
rs3766209	0.90[TSI][hapmap]
rs6700978	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9332978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9332981	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9332982	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9333016	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9333025	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9333031	0.88[ASN][1000 genomes]
rs9333033	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871958	chr1:47350374-47517123	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1009338	chr1:47358532-47555253	Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2763300	chr1:47358532-47628774	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv870695	chr1:47363893-47502714	Bivalent/Poised TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv871288	chr1:47363893-47507808	Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv871377	chr1:47363893-47517123	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv546166	chr1:47407739-47495605	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3353025	chr1:47412603-47418891	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
9	nsv870674	chr1:47416441-47517123	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv945725	chr1:47416844-47436380	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47413800-47424400	Weak transcription	Adipose Nuclei	Adipose
2	chr1:47415000-47421000	Weak transcription	Fetal Intestine Large	intestine
3	chr1:47415800-47426800	Weak transcription	Pancreas	Pancrea
4	chr1:47416600-47420600	Weak transcription	Stomach Mucosa	stomach
5	chr1:47417800-47422000	Enhancers	Fetal Intestine Small	intestine
6	chr1:47418000-47419800	Enhancers	Liver	Liver
7	chr1:47418400-47420600	Weak transcription	Duodenum Mucosa	Duodenum

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